PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g065580.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 179aa    MW: 20310.3 Da    PI: 9.6055
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g065580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB91.21e-2819106794
               NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                          lP+an++rim+ +lP+naki + +ke++q+  s +i  +t++a ++c+ e+rkt++++d+lwa+ ++G+  ++  l +yl++y e +
  Solyc07g065580.1.1  19 QLPMANLTRIMRGILPTNAKINDGSKESMQKLGSYYINRITKKAKERCNMERRKTVTAEDILWAMINMGLTIHARLLAQYLNRYHEYN 106
                         79**********************************************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-2717108IPR009072Histone-fold
SuperFamilySSF471131.07E-2218107IPR009072Histone-fold
PfamPF008081.4E-171983IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTNVNTGVDQ LARRLLEVQL PMANLTRIMR GILPTNAKIN DGSKESMQKL GSYYINRITK  60
KAKERCNMER RKTVTAEDIL WAMINMGLTI HARLLAQYLN RYHEYNSVSY YNVRKPHPNE  120
PIPGYPYPHF PPNVLFYDPV TAALVTSRDF EMAAENDGSP SEASTSIVMP AYPFRQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-2220104892Transcription factor HapC (Eurofung)
4g91_B3e-2220104892Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103450.0Solanum lycopersicum chromosome 7 clone C07HBa0001N06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010324259.11e-132PREDICTED: transcriptional activator hap3-like isoform X3
TrEMBLK4CHN61e-132K4CHN6_SOLLC; Uncharacterized protein
STRINGSolyc07g065580.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14746510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-28nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]